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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMARCA1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Sequence ID:NM_003069
NM_139035
RefSeqGene ID:NG_012526
Entrez Gene ID:6594
Ensembl ID:ENSG00000102038

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 128582376 - 128657420

 Exon Info From UCSC:
NM_003069
NM_139035

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052472Full LengthBC143954SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
40125998Full LengthBC117447SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
6502029IncompleteBC051825SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003060  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003069 NP_003060 P28370 SNF2_N
Myb_DNA-binding
Helicase_C
NM_139035 NP_620604    

Related Sequences

 
mRNAGenPeptSwissProt
M89907 AAA80560 P28370
BC051825 AAH51825 Q86UA8
BC117447 AAI17448 P28370
BC143954 AAI43955 B7ZLQ5
EU636009 ACF37172 D7EZH4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCA1 NP_620604 R.norvegicus Smarca1 317575   XP_229124 96
M.musculus Smarca1 93761 Gene Info NP_444353 96
A.gambiae AgaP_AGAP010700 1272459   XP_311417 75
D.melanogaster Iswi 36390   NP_523719 75
C.elegans isw-1 175944   NP_498468 66
S.cerevisiae ISW2 854480   NP_014948 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)