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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TXNDC5, thioredoxin domain containing 5 (endoplasmic reticulum)
Sequence ID:NM_001145549
NM_030810
NM_022085
Entrez Gene ID:81567
Ensembl ID:ENSG00000239264

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 7883376 - 7910802

 Exon Info From UCSC:
NM_001145549
NM_030810

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3356029Full LengthBC001199thioredoxin domain containing 5 (endoplasmic reticulum)
6671945Full LengthBC052310thioredoxin domain containing 5 (endoplasmic reticulum)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_110437  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145549 NP_001139021    
NM_030810 NP_110437 Q8NBS9 Thioredoxin

Related Sequences

 
mRNAGenPeptSwissProt
BC001199 AAH01199 Q8NBS9
BC052310 AAH52310 Q86UY0
AY358646 AAQ89009 Q8NBS9
AY326464 AAR99514 Q6EHZ3
AK075291 BAC11526 Q8NBS9
AK315598 BAG37969 B2RDM2
AJ440721 CAD29430 Q8NBS9
Q6EHZ3
AL834423 CAD39084 Q8NBS9
AL833008 CAH56286 Q658S9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TXNDC5 NP_110437 M.musculus Txndc5 105245 Gene Info NP_663342 87
R.norvegicus LOC100362805 100362805   XP_002728509 87
D.melanogaster prtp 32124   NP_001188583 47
A.gambiae AgaP_AGAP000044 1272231   XP_311114 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)