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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPUSD4, RNA pseudouridylate synthase domain containing 4
Sequence ID:NM_001144827
NM_032795
Entrez Gene ID:84881
Ensembl ID:ENSG00000165526

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 126072308 - 126081541

 Exon Info From UCSC:
NM_001144827
NM_032795

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4621434Full LengthBC014131RNA pseudouridylate synthase domain containing 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116184  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144827 NP_001138299    
NM_032795 NP_116184 Q96CM3 PseudoU_synth_2

Related Sequences

 
mRNAGenPeptSwissProt
BC014131 AAH14131 Q96CM3
AK027400 BAB55086 Q96CM3
AK300723 BAG62396 B4DUN4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPUSD4 NP_116184 R.norvegicus Rpusd4 315550   NP_001020455 80
M.musculus Rpusd4 71989 Gene Info NP_082316 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)