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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. MATN1, Matrilin 1, cartilage matrix protein
Sequence ID:NM_002379
RefSeqGene ID:NG_027941
Entrez Gene ID:4146
Ensembl ID:ENSG00000162510

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 31186090 - 31196434

NM_002379 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
323553118412531186477
235624363118709331187173
243725893118800331188155
259030063118875531189171
300731323118963631189761
313333553119158131191803
335637023119425131194597
370338303119630431196431

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100064000Full LengthBC160064matrilin 1, cartilage matrix protein
4901582IncompleteBC017506matrilin 1, cartilage matrix protein
40122221IncompleteBC131710matrilin 1, cartilage matrix protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002370  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002379 NP_002370 P21941 EGF
VWA

Related Sequences

 
mRNAGenPeptSwissProt
M55683 AAA63904 P21941
BC131710 AAI31711 A3KMG0
BC160064 AAI60064  
AK312949 BAG35790 P21941
AK075519 BAG52161 B3KQU9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MATN1 NP_002370 M.musculus Matn1 17180 Gene Info NP_034899 90
R.norvegicus Matn1 297894   NP_001006980 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)