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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HIST1H1A, Histone cluster 1, H1a
Sequence ID:NM_005325
Entrez Gene ID:3024
Ensembl ID:ENSG00000124610

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 26017262 - 26018011

NM_005325 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
27812601726026018039

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262187Full LengthBC069492histone cluster 1, H1a
8069099Full LengthBC101593histone cluster 1, H1a
8327608Full LengthBC112140histone cluster 1, H1a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005316  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005325 NP_005316 Q02539 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
BC069492 AAH69492 Q02539
BC101593 AAI01594 Q02539
BC112140 AAI12141 Q02539
EU446958 ABZ92487  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HIST1H1A NP_005316 M.musculus Hist1h1a 80838 Gene Info NP_085112 81
R.norvegicus Hist1h1a 291145   NP_001099583 80
C.elegans hil-2 177390   NP_741417 44
C.elegans hil-6 186584   NP_503554 41
C.elegans hil-3 181073   NP_509375 41
C.elegans hil-4 178866   NP_504277 41
C.elegans hil-5 172242   NP_491678 40
C.elegans his-24 181545   NP_510410 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)