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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDC2, syndecan 2
Sequence ID:NM_002998
Entrez Gene ID:6383
Ensembl ID:ENSG00000169439

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 97506040 - 97622869

NM_002998 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16789750588197506558
6797909760570797605818
7919249761462297614755
92510609762056297620697
106134859762161297624036

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4138627Full LengthBC030133syndecan 2
4931549Full LengthBC049836syndecan 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002989  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002998 NP_002989 P34741 Syndecan

Related Sequences

 
mRNAGenPeptSwissProt
J04621 AAA52701 P34741
BC030133 AAH30133 P34741
BC049836 AAH49836 P34741
HQ257944 ADR82698  
AK025488 BAB15150 P34741
AK074530 BAG51965 P34741
AK097839 BAG53540 P34741
AK298643 BAG60818 B4DQ56
AK300067 BAG61873 B4DT61
AK298939 BAH12908 B7Z5H2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDC2 NP_002989 M.musculus Sdc2 15529 Gene Info NP_032330 84
R.norvegicus Sdc2 25615   NP_037214 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)