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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EFNB2, ephrin-B2
Sequence ID:NM_004093
Entrez Gene ID:1948
Ensembl ID:ENSG00000125266

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 107145337 - 107187315

NM_004093 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
193697107142097107145775
36983811107147228107147341
38123904107148095107148187
39054188107164876107165159
41894335107187190107187336

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262269Full LengthBC069342ephrin-B2
30915225Full LengthBC074856ephrin-B2
30915462Full LengthBC074857ephrin-B2
40034078Full LengthBC105956ephrin-B2
40034079Full LengthBC105955ephrin-B2
40034080Full LengthBC105957ephrin-B2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004084  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004093 NP_004084 P52799 Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
U16797 AAA99707 P52799
L38734 AAC41752 P52799
U81262 AAD03786 P52799
BC069342 AAH69342 P52799
BC074856 AAH74856 P52799
BC074857 AAH74857 P52799
BC105955 AAI05956 P52799
BC105956 AAI05957 P52799
BC105957 AAI05958 P52799
HQ448461 ADQ32941  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EFNB2 NP_004084 M.musculus Efnb2 13642 Gene Info NP_034241 97
R.norvegicus Efnb2 306636   NP_001100798 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)