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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. SMCR7L, Smith-Magenis syndrome chromosome region, candidate 7-like
Sequence ID:NM_019008
Entrez Gene ID:54471
Ensembl ID:ENSG00000100335

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 39912701 - 39913279

NM_019008 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502711Full LengthBC008327Smith-Magenis syndrome chromosome region, candidate 7-like
3160567IncompleteBC002587Smith-Magenis syndrome chromosome region, candidate 7-like
3660003IncompleteBC002861hypothetical protein FLJ20232
4130814IncompleteBC009958hypothetical protein FLJ20232
5502995IncompleteBC032530hypothetical protein FLJ20232
5528993IncompleteBC047292hypothetical protein FLJ20232

Protein Infomation

NM_019008 NP_061881 Q9NQG6  

Related Sequences

BC002587 AAH02587 Q9NQG6
BC008327 AAH08327 Q9NQG6
AK000239 BAA91027  
AK290954 BAF83643 Q7L890
AL136768 CAB66702 Q9H0J7
AL365515 CAB97211 Q9NQG6
AL834205 CAD38892 Q7L890
AM393387 CAL38265  
AM393673 CAL38549  
AM393747 CAL38622  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SMCR7L NP_061881 M.musculus Smcr7l 239555 Gene Info NP_848834 98
R.norvegicus Smcr7l 315141   NP_001007710 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)