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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LHX3, LIM homeobox 3
Sequence ID:NM_014564
NM_178138
RefSeqGene ID:NG_008097
Entrez Gene ID:8022
Ensembl ID:ENSG00000107187

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 139088098 - 139096975

 Exon Info From UCSC:
NM_014564
NM_178138

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062248Full LengthBC156735LIM homeobox 3
100016058BC152818LIM homeobox 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_835258  NP_055379  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014564 NP_055379   Homeobox
LIM
NM_178138 NP_835258 Q9UBR4 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF096169 AAF17292 Q9UBR4
AF156888 AAF36808 Q9UBR4
AF156889 AAF36809 Q9UBR4
BC152818 AAI52819  
BC156735 AAI56736  
AB593062 BAJ84009 F1T0D5
AB593063 BAJ84010 F1T0D5
AB593064 BAJ84011 F1T0D7
AB593065 BAJ84012 F1T0D8
AB593066 BAJ84013 F1T0D9
AB593067 BAJ84014 F1T0D5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LHX3 NP_055379 R.norvegicus Lhx3 170671   XP_001059910 95
M.musculus Lhx3 16871 Gene Info NP_001034742 94
A.gambiae AgaP_AGAP009088 1280042   XP_319836 63
D.melanogaster Lim3 35184   NP_724161 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)