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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MSR1, macrophage scavenger receptor 1
Sequence ID:NM_002445
NM_138715
NM_138716
RefSeqGene ID:NG_012102
Entrez Gene ID:4481
Ensembl ID:ENSG00000038945

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BARRETTESOPHAGUS/ESOPHAGEAL ADENOCARCINOMAASCC1
CTHRC1
PROSTATE CANCERAR
BRCA2
CD82
CDH1
CHEK2
CHEK2
ELAC2
HIP1
HIP1
HNF1B
KLF6
KLF6
MAD1L1
MXI1
MXI1
PTEN
TUSC3
TUSC3
ZFHX3

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 15967593 - 16035497

 Exon Info From UCSC:
NM_002445
NM_138715
NM_138716

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30378951Full LengthBC063878macrophage scavenger receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_619729  NP_619730  NP_002436  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002445 NP_002436   Collagen
Macscav_rec
NM_138715 NP_619729 P21757 SRCR
Collagen
Macscav_rec
NM_138716 NP_619730   SRCR
Collagen
Macscav_rec

Related Sequences

 
mRNAGenPeptSwissProt
AF037351 AAC09251 P21757
BC063878 AAH63878 P21757
HQ447469 ADQ31955  
D90187 BAA14208 P21757
D90188 BAA14209 P21757
AK293217 BAG56756 B4DDJ5
AK293409 BAG56916 B4DE05

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MSR1 NP_619729 M.musculus Msr1 20288 Gene Info NP_001106797 73
R.norvegicus Msr1 498638   XP_573919 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)