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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SERINC1, serine incorporator 1
Sequence ID:NM_020755
Entrez Gene ID:57515
Ensembl ID:ENSG00000111897

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q22.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 122764498 - 122792939

NM_020755 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
171848122764492122766323
18492079122767918122768148
20802224122768265122768409
22252315122772808122772898
23162485122773032122773201
24862623122774914122775051
26242703122775295122775374
27042873122777625122777794
28743035122779664122779825
30363144122792843122792951

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4794962Full LengthBC028607serine incorporator 1
4831122Full LengthBC033029serine incorporator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065806  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020755 NP_065806 Q9NRX5 Serinc

Related Sequences

 
mRNAGenPeptSwissProt
AF164794 AAF80758 Q9NRX5
BC028607 AAH28607 Q9NRX5
BC033029 AAH33029 Q9NRX5
AF087902 AAP97200 Q9NRX5
AY358429 AAQ88795 Q9NRX5
HQ448235 ADQ32715  
JF432159 ADZ15376  
AB033079 BAA86567 Q9NRX5
AL137261 CAB70662 Q9NRX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SERINC1 NP_065806 M.musculus Serinc1 56442 Gene Info NP_062734 96
R.norvegicus Serinc1 294421   NP_891996 96
A.gambiae AgaP_AGAP002569 1273397   XP_312367 51
C.elegans R11H6.2 179964   NP_506611 46
D.melanogaster TMS1 39827   NP_648893 46
C.elegans Y57E12AL.1 179093   NP_741561 45
N.crassa NCU07986 3878795   XP_962656 37
S.pombe SPAPB1A10.07c 2543369   NP_593521 36
S.cerevisiae TMS1 851682   NP_010390 36
A.thaliana AT3G06170 819791   NP_187268 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)