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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HERPUD1, homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
Sequence ID:NM_001010989
NM_001010990
NM_014685
Entrez Gene ID:9709
Ensembl ID:ENSG00000051108

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 56966058 - 56977793

 Exon Info From UCSC:
NM_001010989
NM_001010990
NM_014685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3350209Full LengthBC008320homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
3504515Full LengthBC000086homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
4095997Full LengthBC009739homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
5575914Full LengthBC032673homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001010990  NP_001010989  NP_055500  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001010989 NP_001010989   ubiquitin
NM_001010990 NP_001010990   ubiquitin
NM_014685 NP_055500 Q15011 ubiquitin

Related Sequences

 
mRNAGenPeptSwissProt
AF055001 AAC09355 Q15011
AF055003 AAC09357 Q15011
AF217990 AAG17233 Q9HBR2
BC000086 AAH00086 Q15011
BC008320 AAH08320 Q15011
BC009739 AAH09739 Q15011
BC032673 AAH32673 Q15011
DQ837586 ABI18163 A4UAE9
DQ891867 ABM82793  
EU176642 ABW03443  
D14695 BAA03521 Q15011
AB034989 BAB07891 Q15011
AK223233 BAD96953 Q53FP9
AK291565 BAF84254 A8K6A0
AK292088 BAF84777 A8K7S3
AK302167 BAG63534 B4DXX2
AK304800 BAG65550 B4E3N8
CR457116 CAG33397 Q15011

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HERPUD1 NP_055500 M.musculus Herpud1 64209 Gene Info NP_071726 89
R.norvegicus Herpud1 85430   NP_445975 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)