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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. IFI30, interferon, gamma-inducible protein 30
Sequence ID:NM_006332
Entrez Gene ID:10437
Ensembl ID:ENSG00000216490

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 18284602 - 18288923

NM_006332 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12051828457818284782
2063881828584918286031
3894631828612018286194
4645561828641418286506
5577091828794918288101
7107631828852018288573
76410321828865818288926

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4690088Full LengthBC031020interferon, gamma-inducible protein 30
4863531Full LengthBC021136interferon, gamma-inducible protein 30

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006323  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006332 NP_006323 P13284 GILT

Related Sequences

 
mRNAGenPeptSwissProt
BC021136 AAH21136 P13284
BC031020 AAH31020 P13284
AF401212 AAL02170 Q96P99
DQ884410 ABI63377 A6XNE3
DQ892016 ABM82942  
DQ895206 ABM86132  
AB049659 BAC98466 P13284
AK291551 BAF84240 A8K686

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFI30 NP_006323 M.musculus Ifi30 65972 Gene Info NP_075552 64
R.norvegicus Ifi30 290644   NP_001025197 64
A.thaliana AT1G07080 837219   NP_563779 37
C.elegans F37H8.5 3564874   NP_496397 37
A.gambiae AgaP_AGAP009747 1279154   XP_318831 34
C.elegans pqn-48 173743   NP_494711 34
D.melanogaster CG41378 5740475   NP_001163836 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)