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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HCLS1, hematopoietic cell-specific Lyn substrate 1
Sequence ID:NM_005335
Entrez Gene ID:3059
Ensembl ID:ENSG00000180353

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 121350246 - 121363030

 Exon Info From UCSC:
NM_005335

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2966303Full LengthBC016758hematopoietic cell-specific Lyn substrate 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005326  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005335 NP_005326 P14317 SH3_1
HS1_rep

Related Sequences

 
mRNAGenPeptSwissProt
BC016758 AAH16758 P14317
BT006824 AAP35470 P14317
DQ890664 ABM81590  
DQ893844 ABM84770  
AK312750 BAG35617 P14317
AK298663 BAG60831 B4DQ69
AK298696 BAG60854 B4DQ92
AK300301 BAG62054 B4DTP2
X16663 CAA34651 P14317
CR456794 CAG33075 P14317

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HCLS1 NP_005326 R.norvegicus Hcls1 288077   NP_001011898 88
M.musculus Hcls1 15163 Gene Info NP_032251 86
D.melanogaster Cortactin 42491   NP_524426 48
A.gambiae AgaP_AGAP004625 1275906   XP_557457 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)