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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. COL4A6, Collagen, type IV, alpha 6
Sequence ID:NM_033641
RefSeqGene ID:NG_012059
Entrez Gene ID:1288
Ensembl ID:ENSG00000197565

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 107461381 - 107463608

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021723Full LengthBC140855collagen, type IV, alpha 6
9053200Full LengthBC144669collagen, type IV, alpha 6
3461295IncompleteBC000874collagen, type IV, alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001838  NP_378667  

Protein Infomation

NM_001847 NP_001838 Q14031 Collagen
NM_033641 NP_378667   Collagen

Related Sequences

L22763 AAA16338 Q14031
U04845 AAA19569 Q14031
BC005305 AAH05305 Q9BS57
BC070203 AAH70203 Q6NSE8
BC140855 AAI40856 B2RTX6
BC144669 AAI44670 B7ZMM7
BT007228 AAP35892 Q9BS57
EU182215 ABW24668 A8VPY0
D21337 BAA04809 Q14031
AK300502 BAG62216 B4DU54

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens COL4A6 NP_378667 M.musculus Col4a6 94216 Gene Info NP_444415 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta