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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCAMP4, secretory carrier membrane protein 4
Sequence ID:NM_079834
Entrez Gene ID:113178
Ensembl ID:ENSG00000227500

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1925184 - 1926012

NM_079834 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16619053721905437
6711419149771915024
11524319176921917820
24440019181251918281
40150219188871918988
50362019230681923185
621252519241061926010

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3161979Full LengthBC011747secretory carrier membrane protein 4
4180160Full LengthBC016509secretory carrier membrane protein 4
5247983Full LengthBC062598secretory carrier membrane protein 4
4214718IncompleteBC016685secretory carrier membrane protein 4
4301779IncompleteBC007958secretory carrier membrane protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_524558  NP_612431  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_079834 NP_524558 Q969E2 SCAMP
NM_138422 NP_612431 Q96EY9 dCMP_cyt_deam_1

Related Sequences

 
mRNAGenPeptSwissProt
BC011747 AAH11747 Q969E2
BC011824 AAH11824 Q96EY9
BC016509 AAH16509 Q969E2
BC062598 AAH62598 Q969E2
AF109187 AAQ13496 Q7Z2S3
AF173896 AAQ13643 Q7Z2S3
DQ892063 ABM82989  
DQ892064 ABM82990  
DQ892066 ABM82992  
DQ895258 ABM86184  
AK092056 BAC03797 Q969E2
AK074586 BAC11075 Q969E2
AK074967 BAC11322 Q969E2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCAMP4 NP_524558 R.norvegicus Scamp4 65170   NP_113913 85
M.musculus Scamp4 56214 Gene Info NP_062521 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)