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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RNF114, Ring finger protein 114
Sequence ID:NM_018683
Entrez Gene ID:55905
Ensembl ID:ENSG00000124226

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 48565875 - 48570422

NM_018683 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11764855291348553088
1773274855809748558247
3284344856191848562024
4355494856267248562786
5506574856578448565891
65824654856861248570419

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3858611Full LengthBC013695ring finger protein 114
5264729Full LengthBC066919ring finger protein 114

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061153  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018683 NP_061153 Q9Y508 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
AF265215 AAF75763 Q9Y508
BC013695 AAH13695 Q9Y508
BC066919 AAH66919 Q9Y508
BT006795 AAP35441 Q9Y508
HQ447087 ADQ31574  
AK315638 BAG38006 Q9Y508
AK297188 BAG59677 B4DLW5
AK301731 BAG63197 Q9Y508
BX640603 CAE45709 Q9Y508

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RNF114 NP_061153 M.musculus Rnf114 81018 Gene Info NP_109668 90
R.norvegicus Rnf114 362277   NP_001001517 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)