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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EFNB1, ephrin-B1
Sequence ID:NM_004429
RefSeqGene ID:NG_008887
Entrez Gene ID:1947
Ensembl ID:ENSG00000090776

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CRANIOFRONTONASAL DYSPLASIA 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 68048841 - 68050174

NM_004429 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19086804883968049746
90911866805845968058736
118712796805950668059598
128014086805980268059930
140933286806008468062003

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3867060Full LengthBC016649ephrin-B1
6164440Full LengthBC052979ephrin-B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004420  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004429 NP_004420 P98172 Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
L37361 AAA52369 P98172
U09304 AAA53093 P98172
U09303 AAB41127 P98172
BC016649 AAH16649 P98172
BC052979 AAH52979 P98172
DQ891817 ABM82743  
DQ895005 ABM85931  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EFNB1 NP_004420 M.musculus Efnb1 13641 Gene Info NP_034240 96
R.norvegicus Efnb1 25186   NP_058785 95
C.elegans efn-2 177949   NP_501955 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)