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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHID1, chitinase domain containing 1
Sequence ID:NM_001142674
NM_001142675
NM_001142676
NM_001142677
NM_023947
Entrez Gene ID:66005
Ensembl ID:ENSG00000177830

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 869761 - 910808

 Exon Info From UCSC:
NM_001142674
NM_001142675
NM_001142676
NM_001142677
NM_023947

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504261Full LengthBC000001chitinase domain containing 1
30333427Full LengthBC095409chitinase domain containing 1
4151791IncompleteBC013642chitinase domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076436  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142674 NP_001136146    
NM_001142675 NP_001136147    
NM_001142676 NP_001136148    
NM_001142677 NP_001136149    
NM_023947 NP_076436 Q9BWS9 Glyco_hydro_18

Related Sequences

 
mRNAGenPeptSwissProt
BC000001 AAH00001 Q9BWS9
BC013642 AAH13642 Q9BWS9
BC095409 AAH95409 Q9BWS9
AF212229 AAK14915 Q9BWS9
AY037151 AAK67632 Q9BWS9
HQ447881 ADQ32365  
AK027711 BAB55316 Q9BWS9
AK075413 BAC11603 Q9BWS9
AK124697 BAG54072 Q9BWS9
AK297743 BAG60093 B4DN31
AK301245 BAH13441 B7Z705
BN000479 CAF32458 Q9BWS9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHID1 NP_001136147 R.norvegicus Chid1 293628   NP_001041319 91
M.musculus Chid1 68038 Gene Info NP_001136153 90
A.gambiae AgaP_AGAP008124 1277831   XP_317335 45
D.melanogaster CG8460 34115   NP_609190 42
A.thaliana AT4G01040 827924   NP_192013 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)