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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATN1, atrophin 1
Sequence ID:NM_001007026
NM_001940
RefSeqGene ID:NG_008047
Entrez Gene ID:1822
Ensembl ID:ENSG00000111676

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
DENTATORUBRO-PALLIDOLUYSIAN ATROPHY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 7033625 - 7051480

 Exon Info From UCSC:
NM_001007026
NM_001940

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4181592Full LengthBC051795atrophin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007027  NP_001931  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007026 NP_001007027   Atrophin-1
NM_001940 NP_001931 P54259 Atrophin-1

Related Sequences

 
mRNAGenPeptSwissProt
U23851 AAB50276 P54259
BC051795 AAH51795 Q86V38
EU446506 ABZ92035  
D31840 BAA06626 P54259
D38529 BAA07534 P54259

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATN1 NP_001007027 M.musculus Atn1 13498 Gene Info NP_031907 94
R.norvegicus Atn1 29515   NP_058924 94
N.crassa NCU03053 3879866   XP_963717 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)