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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAPN3, calpain 3, (p94)
Sequence ID:NM_000070
NM_024344
NM_173087
NM_173088
NM_173089
NM_173090
NM_212465
NR_027911
NR_027912
RefSeqGene ID:NG_008660
Entrez Gene ID:825
Ensembl ID:ENSG00000092529

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2A 

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 42651782 - 42703971

 Exon Info From UCSC:
NM_000070
NM_024344
NM_173087
NM_173088
NM_173089
NM_173090
NM_212465

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40147158Full LengthBC146649calpain 3, (p94)
40148444Full LengthBC146672calpain 3, (p94)
40000361IncompleteBC100783calpain 3, (p94)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775112  NP_775111  NP_775110  NP_000061  NP_775113  NP_077320  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000070 NP_000061 P20807 EC 3.4.22.54 efhand
Peptidase_C2
Calpain_III
NM_024344 NP_077320     efhand
Peptidase_C2
Calpain_III
NM_173087 NP_775110     efhand
Peptidase_C2
Calpain_III
NM_173088 NP_775111     efhand
Calpain_III
NM_173089 NP_775112     efhand
NM_173090 NP_775113     efhand

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF127764 AAD28253 P20807 EC 3.4.22.54
AF127765 AAD28254 P20807 EC 3.4.22.54
BC003169 AAH03169 P20807 EC 3.4.22.54
BC003521 AAH03521 P20807 EC 3.4.22.54
BC004883 AAH04883 P20807 EC 3.4.22.54
BC007810 AAH07810 P20807 EC 3.4.22.54
BC067126 AAH67126 P20807 EC 3.4.22.54
BC100782 AAI00783 P20807 EC 3.4.22.54
BC100783 AAI00784 A4FTZ9  
BC100784 AAI00785 Q496N2  
BC107791 AAI07792 P20807 EC 3.4.22.54
BC128605 AAI28606 P20807 EC 3.4.22.54
BC146649 AAI46650 P20807 EC 3.4.22.54
BC146672 AAI46673 P20807 EC 3.4.22.54
BT007322 AAP35986 P20807 EC 3.4.22.54
EU832182 ACE86752    
EU832090 ACE87440    
EU791850 ACI63187 C6EVS3  
EU791851 ACI63188 C6EVS4  
AK293792 BAG57205 B4DEU4  
X85030 CAA59403 P20807 EC 3.4.22.54

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN3 NP_000061 R.norvegicus Capn3 29155   NP_058813 94
M.musculus Capn3 12335 Gene Info NP_031627 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)