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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HP1BP3, heterochromatin protein 1, binding protein 3
Sequence ID:NM_016287
Entrez Gene ID:50809
Ensembl ID:ENSG00000127483

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 21069622 - 21107003

 Exon Info From UCSC:
NM_016287

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5271429Full LengthBC045660heterochromatin protein 1, binding protein 3
6153774IncompleteBC046170heterochromatin protein 1, binding protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057371  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016287 NP_057371 Q5SSJ5 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
AF113534 AAF14871 Q5SSJ5
BC032139 AAH32139 Q5SSJ5
BC045660 AAH45660 Q5SSJ5
EU832526 ACE87698  
AK291252 BAF83941 Q5SSJ5
AK023129 BAG51160 Q5SSJ5
AK303456 BAG64500 B4E0N8
AK304065 BAG64972 Q5SSJ5
AL833978 CAD38822 Q5SSJ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HP1BP3 NP_057371 M.musculus Hp1bp3 15441 Gene Info NP_001116369 91
R.norvegicus Hp1bp3 313647   NP_954539 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)