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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC25A20, solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
Sequence ID:NM_000387
RefSeqGene ID:NG_008171
Entrez Gene ID:788
Ensembl ID:ENSG00000178537

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 48895142 - 48936319

NM_000387 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
198674889435648895204
8689924889593948896063
99311024889652448896633
110311754889698748897059
117612934889997448900091
129413844891679048916880
138515124892142948921556
151316054892941248929504
160618854893612248936401

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050073Full LengthBC001689solute carrier family 25 (carnitine/acylcarnitine translocase), member 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000378  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000387 NP_000378 O43772 Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
BC001689 AAH01689 O43772
DQ892599 ABM83525  
DQ895828 ABM86754  
AK312962 BAG35801 O43772
AK301744 BAG63207 B4DWZ5
Y10319 CAA71367 O43772

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC25A20 NP_000378 M.musculus Slc25a20 57279 Gene Info NP_065266 93
R.norvegicus Slc25a20 117035   NP_446417 91
A.gambiae AgaP_AGAP006104 1276776   XP_316164 62
C.elegans dif-1 177530   NP_501223 57
D.melanogaster colt 33470   NP_477221 53
N.crassa NCU07263 3878256   XP_962117 45
A.thaliana BOU 834724   NP_568670 42
S.cerevisiae CRC1 854267   NP_014743 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta