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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PGLYRP1, peptidoglycan recognition protein 1
Sequence ID:NM_005091
Entrez Gene ID:8993
Ensembl ID:ENSG00000008438

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2-q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 46522440 - 46526323

NM_005091 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
212864652241146522676
2874084652278346522904
4099724652599246526555

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069351Full LengthBC101845peptidoglycan recognition protein 1
8069353Full LengthBC101847peptidoglycan recognition protein 1
40003108Full LengthBC096154peptidoglycan recognition protein 1
40003109Full LengthBC096155peptidoglycan recognition protein 1
40003112Full LengthBC096156peptidoglycan recognition protein 1
40003114Full LengthBC096157peptidoglycan recognition protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005082  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005091 NP_005082 O75594 Amidase_2

Related Sequences

 
mRNAGenPeptSwissProt
AF076483 AAC31822 O75594
AF242517 AAF99598 O75594
BC096154 AAH96154 O75594
BC096155 AAH96155 O75594
BC096156 AAH96156 O75594
BC096157 AAH96157 O75594
BC101845 AAI01846 O75594
BC101847 AAI01848 O75594
AY358936 AAQ89295 O75594

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PGLYRP1 NP_005082 M.musculus Pglyrp1 21946 Gene Info NP_033428 70
R.norvegicus Pglyrp1 84387   NP_445825 69
D.melanogaster PGRP-SC1b 35861   NP_610409 49
D.melanogaster PGRP-SC1a 35859   NP_610407 49
D.melanogaster PGRP-SC2 35862   NP_610410 48
A.gambiae PGRPS3 1276947   XP_316359 47
A.gambiae PGRPS2 1276948   XP_316360 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta