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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDHR1, cadherin-related family member 1
Sequence ID:NM_001171971
NM_033100
RefSeqGene ID:NG_028034
Entrez Gene ID:92211
Ensembl ID:ENSG00000148600

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CONE-ROD DYSTROPHY 15 

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 85954517 - 85976281

 Exon Info From UCSC:
NM_001171971
NM_033100

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5492127Full LengthBC038799protocadherin 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_149091  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001171971 NP_001165442    
NM_033100 NP_149091 Q96JP9 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC038799 AAH38799 Q96JP9
AB053448 BAB61905 Q96JP9
AK124752 BAG54089 B3KWC7
AB593154 BAJ84086 F1T0L2
AB593155 BAJ84087 F1T0L2
AL080188 CAH10732 Q96JP9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDHR1 NP_149091 M.musculus Cdhr1 170677 Gene Info NP_570948 85
R.norvegicus Cdhr1 93662   NP_446024 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)