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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RNF6, Ring finger protein (C3H2C3 type) 6
Sequence ID:NM_005977
NM_183044
NM_183043
RefSeqGene ID:NG_017042
Entrez Gene ID:6049
Ensembl ID:ENSG00000127870

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
ESOPHAGEAL CANCER, SOMATICDEC1
DLEC1
LZTS1
TGFBR2
TGFBR2
WWOX

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 26706252 - 26796398

 Exon Info From UCSC:
NM_005977
NM_183044
NM_183043

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4508997Full LengthBC034688ring finger protein (C3H2C3 type) 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_898865  NP_898864  NP_005968  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005977 NP_005968 Q9Y252 zf-C3HC4
NM_183043 NP_898864 Q9Y252 zf-C3HC4
NM_183044 NP_898865 Q9Y252 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
AY009109 AAG49400 Q9Y252
BC034688 AAH34688 Q9Y252
AF293342 AAK00848 Q9BZP5
DQ891481 ABM82407  
DQ896825 ABM87824  
AK312435 BAG35344 Q9Y252
AK293272 BAG56801 B4DDP0
AJ010346 CAB40413 Q9Y252
AJ010347 CAB40414 Q9Y252
AL133621 CAB63747 Q9Y252
CR749238 CAH18094 Q68DX6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RNF6 NP_005968 M.musculus Rnf6 74132 Gene Info NP_083050 75
R.norvegicus Rnf6 304271   NP_001100588 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)