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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RFX3, regulatory factor X, 3 (influences HLA class II expression)
Sequence ID:NM_002919
NM_134428
Entrez Gene ID:5991
Ensembl ID:ENSG00000080298

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 3224806 - 3525799

 Exon Info From UCSC:
NM_002919
NM_134428

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3531443Full LengthBC022191regulatory factor X, 3 (influences HLA class II expression)
5295394Full LengthBC067778regulatory factor X, 3 (influences HLA class II expression)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_602304  NP_002910  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002919 NP_002910   RFX_DNA_binding
RFX1_trans_act
NM_134428 NP_602304 P48380 RFX_DNA_binding
RFX1_trans_act

Related Sequences

 
mRNAGenPeptSwissProt
BC022191 AAH22191 P48380
BC067778 AAH67778 P48380
AK289540 BAF82229 P48380
X76092 CAA53706 P48380

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RFX3 NP_602304 M.musculus Rfx3 19726 Gene Info NP_001159886 99
D.melanogaster Rfx 41266   NP_649999 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)