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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC6A5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Sequence ID:NM_004211
RefSeqGene ID:NG_013086
Entrez Gene ID:9152
Ensembl ID:ENSG00000165970

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
HYPEREKPLEXIA 3 
HYPEREKPLEXIA, HEREDITARY 1, AUTOSOMAL DOMINANT OR RECESSIVEGLRA1
GLRB
GPHN

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 20620950 - 20676463

 Exon Info From UCSC:
NM_004211

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40007841Full LengthBC096319solute carrier family 6 (neurotransmitter transporter, glycine), member 5
40007842Full LengthBC096320solute carrier family 6 (neurotransmitter transporter, glycine), member 5
40007845Full LengthBC096321solute carrier family 6 (neurotransmitter transporter, glycine), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004202  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004211 NP_004202 Q9Y345 SNF

Related Sequences

 
mRNAGenPeptSwissProt
AF085412 AAC95145 Q9Y345
AF142501 AAD27892 Q9Y345
BC096319 AAH96319 Q9Y345
BC096320 AAH96320 Q4VAM6
BC096321 AAH96321 Q4VAM5
BC096322 AAH96322 Q4VAM4
AF117999 AAK12641 Q9Y345
AF352733 AAK29670 Q9Y345

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC6A5 NP_004202 R.norvegicus Slc6a5 171148   NP_976079 95
M.musculus Slc6a5 104245 Gene Info NP_001139485 94
D.melanogaster CG5549 37772   NP_611836 52
A.gambiae AgaP_AGAP010481 1272609   XP_311463 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)