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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZC3H13, Zinc finger CCCH-type containing 13
Sequence ID:NM_015070
Entrez Gene ID:23091
Ensembl ID:ENSG00000123200

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q14.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 46529804 - 46549773

 Exon Info From UCSC:
NM_015070

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063350Full LengthBC157032zinc finger CCCH-type containing 13
3607400IncompleteBC019000zinc finger CCCH-type containing 13
5399561IncompleteBC032425zinc finger CCCH-type containing 13
6106105IncompleteBC107864zinc finger CCCH-type containing 13
6148621IncompleteBC050658KIAA0853
6714213IncompleteBC062685KIAA0853
100062342BC156055zinc finger CCCH-type containing 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055885  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015070 NP_055885   zf-CCCH

Related Sequences

 
mRNAGenPeptSwissProt
BC019000 AAH19000 Q6PJ96
BC032425 AAH32425 A0PJJ2
BC107864 AAI07865 Q32Q34
BC156055 AAI56056  
BC157032 AAI57033  
AY283618 AAP37483 Q5T200
AB020660 BAA74876 Q5T200
AK001815 BAG50980 B3KMG8
AK074924 BAG52030 B3KQG8
AL136745 CAB66679 Q5T200
AL831833 CAD38544 Q5T200

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZC3H13 NP_055885 M.musculus Zc3h13 67302 Gene Info NP_080359 86
R.norvegicus Zc3h13 305955   NP_001163942 86
N.crassa NCU01466 3872891   XP_956743 31
P.falciparum MAL7P1.129 2655152   XP_001349143 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)