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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM11, tripartite motif containing 11
Sequence ID:NM_145214
Entrez Gene ID:81559
Ensembl ID:ENSG00000154370

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 228581376 - 228582619

NM_145214 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
271601228581378228582952
16021702228584647228584747
17031725228584843228584865
17261956228588664228588894
19572052228589766228589861
20532715228593854228594516

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4875080Full LengthBC069227tripartite motif-containing 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_660215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145214 NP_660215 Q96F44 zf-C3HC4
SPRY
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
AF220125 AAG53498 Q96F44
BC011629 AAH11629 Q96F44
BC069227 AAH69227 Q96F44
AF327056 AAM63957 Q96F44
EU447015 ABZ92544  
AK074866 BAC11254 Q96F44
AK314539 BAG37129 Q96F44
AK097825 BAG53535 Q96F44
AK301859 BAG63300 Q96F44

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM11 NP_660215 M.musculus Trim11 94091 Gene Info NP_444398 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)