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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SKA1, spindle and kinetochore associated complex subunit 1
Sequence ID:NM_001039535
NM_145060
Entrez Gene ID:220134
Ensembl ID:ENSG00000154839

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 47901412 - 47918919

 Exon Info From UCSC:
NM_001039535
NM_145060

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3909951Full LengthBC015706chromosome 18 open reading frame 24
4761969IncompleteBC015606chromosome 18 open reading frame 24

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659497  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039535 NP_001034624    
NM_145060 NP_659497 Q96BD8 DUF1395

Related Sequences

 
mRNAGenPeptSwissProt
BC015706 AAH15706 Q96BD8
AK313968 BAG36683 Q96BD8
AK303464 BAG64506 Q96BD8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SKA1 NP_001034624 R.norvegicus Ska1 291441   NP_001099604 80
M.musculus Ska1 66468 Gene Info NP_001157827 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)