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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMD13, proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Sequence ID:NM_002817
NM_175932
Entrez Gene ID:5719
Ensembl ID:ENSG00000185627

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 236980 - 252981

 Exon Info From UCSC:
NM_002817
NM_175932

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3506530Full LengthBC001100proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
3535807Full LengthBC001747proteasome (prosome, macropain) 26S subunit, non-ATPase, 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002808  NP_787128  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002817 NP_002808 Q9UNM6 PCI
NM_175932 NP_787128   PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF086708 AAC64104 Q9UNM6
AF083245 AAD39843 Q9Y6E3
AF107836 AAD43441 Q9UNM7
AF107837 AAD43442 Q9UNM6
BC001100 AAH01100 Q9UNM6
BC001747 AAH01747 Q9UNM6
BT007307 AAP35971 Q9UNM6
DQ892171 ABM83097  
DQ895365 ABM86291  
AB009398 BAA33214 Q9UNM6
AK222895 BAD96615 Q53GN6
AK314733 BAG37274 B2RBM7
AK094775 BAG52927 Q9UNM6
AK295944 BAG58728 B4DJ66
BX647314 CAI46009 Q5HYL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD13 NP_002808 M.musculus Psmd13 23997 Gene Info NP_036005 97
R.norvegicus Psmd13 365388   NP_001102395 97
A.gambiae AgaP_AGAP001651 1281522   XP_321445 49
D.melanogaster Rpn9 42802   NP_651177 46
C.elegans rpn-9 174715   NP_496405 43
N.crassa NCU02374 3875949   XP_959795 39
A.thaliana AT4G19006 827638   NP_680721 39
S.pombe rpn9 2543114   NP_593594 38
A.thaliana AT5G45620 834602   NP_199375 38
S.cerevisiae RPN9 852037   NP_010715 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)