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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COX5B, cytochrome c oxidase subunit Vb
Sequence ID:NM_001862
Entrez Gene ID:1329
Ensembl ID:ENSG00000135940

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 98262520 - 98264657

NM_001862 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11329826252098262651
1332069826352998263602
2073069826380698263905
3075049826445898264655

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3952882Full LengthBC006229cytochrome c oxidase subunit Vb

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001853  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001862 NP_001853 P10606 COX5B

Related Sequences

 
mRNAGenPeptSwissProt
M19961 AAA52061 P10606
BC006229 AAH06229 P10606
BT006742 AAP35388 P10606
DQ890572 ABM92189  
EU176480 ABW03281  
CR541727 CAG46528 Q6FHM4
CR541753 CAG46553 Q6FHJ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COX5B NP_001853 M.musculus Cox5b 12859 Gene Info NP_034072 84
R.norvegicus Cox5b 94194   NP_446038 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)