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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCUBE1, signal peptide, CUB domain, EGF-like 1
Sequence ID:NM_173050
RefSeqGene ID:NG_029056
Entrez Gene ID:80274
Ensembl ID:ENSG00000159307

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 43599997 - 43739287

 Exon Info From UCSC:
NM_173050

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062295Full LengthBC156731signal peptide, CUB domain, EGF-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766638  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173050 NP_766638 Q8IWY4 EGF
CUB
EGF_CA
GCC2_GCC3

Related Sequences

 
mRNAGenPeptSwissProt
BC047916 AAH47916 Q86TI6
BC127263 AAI27264 A0JP65
BC156731 AAI56732 Q8IWY4
AF525689 AAN77133 Q8IWY4
AK127719 BAC87098 Q6ZS56

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCUBE1 NP_766638 M.musculus Scube1 64706 Gene Info NP_073560 92
R.norvegicus Scube1 315174   NP_001128356 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)