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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TPM1, tropomyosin 1 (alpha)
Sequence ID:NM_000366
NM_001018004
NM_001018005
NM_001018006
NM_001018007
NM_001018008
NM_001018020
RefSeqGene ID:NG_007557
Entrez Gene ID:7168
Ensembl ID:ENSG00000140416

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 3 
CARDIOMYOPATHY,DILATED, 1Y 

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 63340598 - 63364111

 Exon Info From UCSC:
NM_000366
NM_001018004
NM_001018005
NM_001018006
NM_001018007
NM_001018008
NM_001018020

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2962925Full LengthBC007433tropomyosin 1 (alpha)
5730451Full LengthBC053545tropomyosin 1 (alpha)
5732846IncompleteBC050473tropomyosin 1 (alpha)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001018006  NP_001018007  NP_001018008  NP_000357  NP_001018005  NP_001018020  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000366 NP_000357   Tropomyosin
NM_001018004 NP_001018004    
NM_001018005 NP_001018005 P09493 Tropomyosin
NM_001018006 NP_001018006   Tropomyosin
NM_001018007 NP_001018007   Tropomyosin
NM_001018008 NP_001018008   Tropomyosin
NM_001018020 NP_001018020   Tropomyosin

Related Sequences

 
mRNAGenPeptSwissProt
L02922 AAA16888 Q07413
L02923 AAA16889 Q07414
M19713 AAA61225 P09493
M19714 AAA61226 P09493
M19715 AAA61227 P09493
BC007433 AAH07433 P09493
BC050473 AAH50473 P09493
BC053545 AAH53545 P09493
AF474156 AAL84569 Q8TCG4
AY640414 AAT68294 P09493
AY640415 AAT68295 P09493
DQ424903 ABD83668 Q1ZYL5
DQ893259 ABM84185  
DQ896588 ABM87587  
EU832801 ACE87812  
GQ129381 ACT64515  
AK129882 BAC85248 C9IZA2
AK131384 BAD18535 Q6ZN40
AB209041 BAD92278 Q59GR8
AK298625 BAH12832 B7Z596
AK299387 BAH13023 P09493
AK301319 BAH13458 B7Z722
AJ000147 CAA03930 O15513
AJ001055 CAA04505 O15513
X12369 CAA30930 P09493
Z24727 CAA80853 Q15657
AL050179 CAB43309 P09493

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)