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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGA6, integrin, alpha 6
Sequence ID:NM_000210
NM_001079818
RefSeqGene ID:NG_008853
Entrez Gene ID:3655
Ensembl ID:ENSG00000091409

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPIDERMOLYSIS BULLOSA, JUNCTIONAL, WITH PYLORIC ATRESIAITGB4

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 173292614 - 173371002

 Exon Info From UCSC:
NM_000210
NM_001079818

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020444Full LengthBC136455integrin, alpha 6
9020445Full LengthBC136456integrin, alpha 6
3950016IncompleteBC007002integrin, alpha 6
6150124IncompleteBC050585integrin, alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000201  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000210 NP_000201   Integrin_alpha
FG-GAP
Integrin_alpha2
NM_001079818 NP_001073286    

Related Sequences

 
mRNAGenPeptSwissProt
S66196 AAB20354 P23229
S66213 AAB20355 P23229
BC050585 AAH50585 P23229
BC136455 AAI36456 P23229
BC136456 AAI36457 P23229
DQ858220 ABH11650 P23229
AB208842 BAD92079 P23229
AK294436 BAG57680 P23229
AK296496 BAG59130 P23229
X53586 CAA37655 P23229
X59512 CAA42099 P23229

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGA6 NP_001073286 M.musculus Itga6 16403 Gene Info NP_032423 92
R.norvegicus Itga6 114517   XP_002729215 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)