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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRAPPC4, trafficking protein particle complex 4
Sequence ID:NM_016146
Entrez Gene ID:51399
Ensembl ID:ENSG00000196655

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118889240 - 118894382

NM_016146 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1440118889240118889679
441615118889852118890026
616719118890859118890962
720846118892469118892595
8471198118894030118894381

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3876778Full LengthBC010866trafficking protein particle complex 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057230  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016146 NP_057230 Q9Y296 Sybindin

Related Sequences

 
mRNAGenPeptSwissProt
AF151862 AAD34099 Q9Y296
AF078862 AAD44494 Q9Y296
AF105025 AAF21897 Q9Y296
AF161520 AAF29135 Q9Y296
BC010866 AAH10866 Q9Y296
AK290520 BAF83209 Q9Y296
AK293914 BAG57297 B4DF36
AK293977 BAG57347 B4DF86
AK297422 BAG59853 B4DME1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRAPPC4 NP_057230 M.musculus Trappc4 60409 Gene Info NP_068561 98
R.norvegicus Trappc4 367073   NP_001003708 97
A.gambiae AgaP_AGAP008106 1277847   XP_317351 61
D.melanogaster Trs23 34197   NP_609247 60
A.thaliana AT5G02280 831680   NP_195848 58
S.pombe SPBC3B9.12 2540976   NP_596670 53
C.elegans F36D4.2 185357   NP_505435 49
S.cerevisiae TRS23 851833   NP_010532 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)