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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC10A4, solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Sequence ID:NM_152679
Entrez Gene ID:201780
Ensembl ID:ENSG00000145248

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4p11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 48485359 - 48490860

NM_152679 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18094848535948486167
81010204848694848487158
102121184849044348491540

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502817Full LengthBC012048solute carrier family 10 (sodium/bile acid cotransporter family), member 4
4897519Full LengthBC019066solute carrier family 10 (sodium/bile acid cotransporter family), member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_689892  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152679 NP_689892 Q96EP9 SBF

Related Sequences

 
mRNAGenPeptSwissProt
BC012048 AAH12048 Q96EP9
BC019066 AAH19066 Q96EP9
AY704414 AAW30130 Q96EP9
DQ892628 ABM83554  
EU176704 ABW03505  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC10A4 NP_689892 M.musculus Slc10a4 231290 Gene Info NP_775579 87
R.norvegicus Slc10a4 305309   NP_001008555 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)