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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ARPC5L, Actin related protein 2/3 complex, subunit 5-like
Sequence ID:NM_030978
Entrez Gene ID:81873
Ensembl ID:ENSG00000136950

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 127631513 - 127640012

NM_030978 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1235127631483127631717
236308127635970127636042
309485127637253127637429
4861024127639156127639694

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3163950Full LengthBC002418actin related protein 2/3 complex, subunit 5-like
3451934Full LengthBC000798actin related protein 2/3 complex, subunit 5-like
3509794Full LengthBC000018actin related protein 2/3 complex, subunit 5-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112240  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030978 NP_112240 Q9BPX5 P16-Arc

Related Sequences

 
mRNAGenPeptSwissProt
BC000018 AAH00018 Q9BPX5
BC000798 AAH00798 Q9BPX5
BC002418 AAH02418 Q9BPX5
AF087842 AAP97155 Q9BPX5
HQ448697 ADQ33175  
AK056174 BAG51639 B3KPC7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARPC5L NP_112240 M.musculus Arpc5l 74192 Gene Info NP_083085 97
R.norvegicus Arpc5l-ps1 501132   XP_576552 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)