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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNGA1, cyclic nucleotide gated channel alpha 1
Sequence ID:NM_000087
NM_001142564
RefSeqGene ID:NG_009193
Entrez Gene ID:1259
Ensembl ID:ENSG00000198515

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
RETINITIS PIGMENTOSA 49 

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 47938394 - 48014961

 Exon Info From UCSC:
NM_000087
NM_001142564

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100014415BC140399cyclic nucleotide gated channel alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000078  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000087 NP_000078 P29973 cNMP_binding
Ion_trans
NM_001142564 NP_001136036    

Related Sequences

 
mRNAGenPeptSwissProt
M84741 AAA52010 P29973
S42457 AAB22778 P29973
BC140399 AAI40400  
AK292021 BAF84710 P29973
X64802 CAA46027 Q08124

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNGA1 NP_001136036 M.musculus Cnga1 12788 Gene Info NP_031749 91
R.norvegicus Cnga1 85259   NP_445949 90
C.elegans tax-4 176297   NP_499033 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)