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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PLSCR1, phospholipid scramblase 1
Sequence ID:NM_021105
Entrez Gene ID:5359
Ensembl ID:ENSG00000188313

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 146232967 - 146262496

NM_021105 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
20940146232967146233887
9411102146234792146234953
11031264146239330146239491
12651485146239619146239839
14861528146243391146243433
15291746146246400146246617
17471827146251256146251336
18281853146254326146254351
18542228146262253146262627

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4864775Full LengthBC021100phospholipid scramblase 1
5518165Full LengthBC032718phospholipid scramblase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066928  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021105 NP_066928 O15162 Scramblase

Related Sequences

 
mRNAGenPeptSwissProt
AF098642 AAC99413 O15162
BC017901 AAH17901 Q8WVK1
BC021100 AAH21100 O15162
BC032718 AAH32718 O15162
BC070251 AAH70251  
DQ890879 ABM81805  
DQ894033 ABM84959  
AB006746 BAA32568 O15162
AK313377 BAG36175 O15162
AK300181 BAG61960 B4DTE8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PLSCR1 NP_066928 M.musculus Plscr1 22038 Gene Info NP_035766 79
R.norvegicus Plscr1 117540   NP_476542 78
A.gambiae AgaP_AGAP005504 1276186   XP_001688668 57
D.melanogaster scramb1 326186   NP_648389 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)