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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DDX23, DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Sequence ID:NM_004818
Entrez Gene ID:9416
Ensembl ID:ENSG00000174243

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 49223538 - 49245905

 Exon Info From UCSC:
NM_004818

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820898Full LengthBC002366DEAD (Asp-Glu-Ala-Asp) box polypeptide 23

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004809  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004818 NP_004809 Q9BUQ8 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF026402 AAB87902 Q9BUQ8 EC 3.6.4.13
BC002366 AAH02366 Q9BUQ8 EC 3.6.4.13
DQ891425 ABM82351    
DQ894599 ABM85525    
AK292921 BAF85610 A8KA56  
AK312379 BAG35297 Q9BUQ8 EC 3.6.4.13
AK128428 BAG54673 B3KY11  
AK294877 BAG57976 B4DH15  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX23 NP_004809 M.musculus Ddx23 74351 Gene Info NP_001074450 99
R.norvegicus Ddx23 300208   NP_001100263 99
D.melanogaster CG10333 35112   NP_609888 68
A.gambiae AgaP_AGAP007825 1278134   XP_317676 66
C.elegans ddx-23 175818   NP_498260 64
A.thaliana AT2G33730 817938   NP_180929 54
N.crassa NCU02803 3880623   XP_964459 54
S.pombe prp28 2538728   NP_587984 50
P.falciparum PFE0925c 813000   XP_001351742 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)