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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIO, trio Rho guanine nucleotide exchange factor
Sequence ID:NM_007118
Entrez Gene ID:7204
Ensembl ID:ENSG00000038382

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5p15.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 14465697 - 14510310

 Exon Info From UCSC:
NM_007118

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4586722IncompleteBC017268triple functional domain (PTPRF interacting)
5497679IncompleteBC035585triple functional domain (PTPRF interacting)
9094294IncompleteBC172213triple functional domain (PTPRF interacting)
9094295IncompleteBC172214triple functional domain (PTPRF interacting)

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007118 NP_009049 O75962 EC 2.7.11.1  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U42390 AAC34245 O75962 EC 2.7.11.1
AF091395 AAC43042 O75962 EC 2.7.11.1
BC017268 AAH17268 O75962 EC 2.7.11.1
BC035585 AAH35585 O75962 EC 2.7.11.1
AB115332 BAC79392 Q7Z2K2  
AK131423 BAD18570 O75962 EC 2.7.11.1
AB209754 BAD92991 O75962 EC 2.7.11.1
AK304786 BAG65537 B4E3M5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIO NP_009049 M.musculus Trio 223435 Gene Info NP_001074771 97
A.gambiae AgaP_AGAP006107 1276778   XP_316167 48
D.melanogaster trio 43974   NP_651960 47
C.elegans unc-73 171988   NP_001021496 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta