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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CIB2, calcium and integrin binding family member 2
Sequence ID:NM_001271888
NM_001271889
NM_006383
Entrez Gene ID:10518
Ensembl ID:ENSG00000136425

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DEAFNESS, AUTOSOMAL RECESSIVE 48 
USHER SYNDROME,TYPE IJ 

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 78396991 - 78423563

Transcript StartTranscript EndChromosomal Start Chromosomal End
347177839699078397673
7189137839808078398275
91410617840157678401723
106211737840350678403617
117412087841604678416080
120915807842350678423877

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4841632Full LengthBC033108calcium and integrin binding family member 2
5287072Full LengthBC047381calcium and integrin binding family member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006374  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271888 NP_001258817    
NM_001271889 NP_001258818    
NM_006383 NP_006374 O75838 efhand

Related Sequences

 
mRNAGenPeptSwissProt
BC033108 AAH33108 Q05BT6
BC047381 AAH47381 O75838
BT019962 AAV38765 Q5TZX7
HQ447978 ADQ32461  
AB012955 BAA33584 O75838
AK293167 BAG56711 B4DDF0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CIB2 NP_006374 R.norvegicus Cib2 300719   NP_001015010 98
M.musculus Cib2 56506 Gene Info NP_062660 97
D.melanogaster CG9236 37363   NP_611523 60
C.elegans F30A10.1 172774   NP_492514 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)