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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SCN2B, sodium channel, voltage-gated, type II, beta subunit
Sequence ID:NM_004588
Entrez Gene ID:6327
Ensembl ID:ENSG00000149575

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118037601 - 118047146

NM_004588 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14283118033518118037800
42844494118038799118039009
44954661118039299118039465
46624922118047076118047336

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5764346Full LengthBC036793sodium channel, voltage-gated, type II, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004579  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004588 NP_004579 Q5U0K8
O60939
V-set

Related Sequences

 
mRNAGenPeptSwissProt
AF049498 AAC05274 Q5U0K8
O60939
AF007783 AAC26013 O60939
AF107028 AAD47196 O60939
U87555 AAF21472 Q5U0K8
O60939
BC036793 AAH36793 Q5U0K8
O60939
AY358945 AAQ89304 Q5U0K8
O60939
BT019487 AAV38294 Q5U0K8
O60939
DQ892426 ABM83352  
DQ892634 ABM83560  
DQ895640 ABM86566  
AK313891 BAG36614 Q5U0K8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCN2B NP_004579 R.norvegicus Scn2b 25349   NP_037009 93
M.musculus Scn2b 72821 Gene Info NP_001014761 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)