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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HAVCR1, hepatitis A virus cellular receptor 1
Sequence ID:NM_001099414
NM_001173393
NM_012206
RefSeqGene ID:NG_017001
Entrez Gene ID:26762
Ensembl ID:ENSG00000113249

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ATOPYIL21R
IL4R
IL4R
MS4A2
PHF11
PLA2G7
SELP
SPINK5

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 156456436 - 156485970

 Exon Info From UCSC:
NM_001099414
NM_001173393
NM_012206

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3826378Full LengthBC013325hepatitis A virus cellular receptor 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001099414 NP_001092884    
NM_001173393 NP_001166864    
NM_012206 NP_036338    

Related Sequences

 
mRNAGenPeptSwissProt
AF043724 AAC39862 Q96D42
BC013325 AAH13325 Q96D42
DQ892770 ABM83696  
DQ896019 ABM87018  
HQ412639 ADZ24772 F1CME6
HQ412640 ADZ24773 F1CME7
HQ412641 ADZ24774 F1CME8
AK298259 BAG60523 B4DPB1
CR457114 CAG33395 Q96D42

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HAVCR1 NP_036338 R.norvegicus Havcr1 286934   NP_775172 49
M.musculus Havcr1 171283 Gene Info NP_599009 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)