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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMD3, proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
Sequence ID:NM_002809
Entrez Gene ID:5709
Ensembl ID:ENSG00000108344

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 38151430 - 38154212

 Exon Info From UCSC:
NM_002809

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505074Full LengthBC000074proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
3832823Full LengthBC004859proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
3868681Full LengthBC012302proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
3901555Full LengthBC020518proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
5205360Full LengthBC025686proteasome (prosome, macropain) 26S subunit, non-ATPase, 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002800  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002809 NP_002800 O43242 PCI
Rpn3_C

Related Sequences

 
mRNAGenPeptSwissProt
AF091075 AAC72944 O95325
BC000074 AAH00074 O43242
BC004859 AAH04859 O43242
BC012302 AAH12302 O43242
BC020518 AAH20518 O43242
BC025686 AAH25686 O43242
BT007217 AAP35881 O43242
JF432359 ADZ15576  
D67025 BAA23651 O43242
AK055799 BAB71019 Q96N86
AK094206 BAC04310 Q8N9M2
AK022896 BAG51131 O43242
AK054611 BAG51399 B3KNN7
AK293539 BAG57021 B4DEB0
AK298411 BAG60639 B4DPM7
AK300081 BAG61884 B4DT72
AK300973 BAG62596 B4DV84
CR456772 CAG33053 Q6IBN0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD3 NP_002800 M.musculus Psmd3 22123 Gene Info NP_033465 98
R.norvegicus Psmd3 287670   NP_001008282 98
A.gambiae PSMD3_ANOGA 1280037   XP_319831 62
D.melanogaster Rpn3 35176   NP_477300 58
A.thaliana AT1G75990 843931   NP_177726 46
C.elegans rpn-3 176196   NP_498869 46
A.thaliana EMB2719 838609   NP_173447 46
N.crassa NCU02224 3875784   XP_959637 46
S.pombe rpn3 2540109   NP_595282 44
P.falciparum MAL13P1.190 813745   XP_001350108 40
S.cerevisiae RPN3 856742   NP_010938 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)