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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SS18, Synovial sarcoma translocation, chromosome 18
Sequence ID:NM_001007559
NM_005637
Entrez Gene ID:6760
Ensembl ID:ENSG00000141380

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 23612362 - 23670542

 Exon Info From UCSC:
NM_001007559
NM_005637

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40004908Full LengthBC096221synovial sarcoma translocation, chromosome 18
40004909Full LengthBC096222synovial sarcoma translocation, chromosome 18
40004911Full LengthBC096223synovial sarcoma translocation, chromosome 18
40004912Full LengthBC096224synovial sarcoma translocation, chromosome 18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007560  NP_005628  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001007559 NP_001007560 Q15532   SSXT
NM_005637 NP_005628 Q4VAX0   SSXT

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF161377 AAF28937 Q96GQ7 EC 3.6.4.13
BC096221 AAH96221 Q4VAX0  
BC096222 AAH96222 Q4VAX2  
BC096223 AAH96223 Q15532  
BC096224 AAH96224 Q4VAX0  
AF343880 AAK21314 Q15532  
AF244972 AAM00188 Q8TDQ9  
EU832762 ACE87773    
GQ129305 ACT64439    
AK289510 BAF82199 A8K0E5  
AK296949 BAG59495 B4DLD3  
AK299082 BAG61146 B4DR34  
AK301504 BAG63015 Q4VAX0  
AK304305 BAG65158 B4E2J6  
AK316302 BAH14673 Q4VAX0  
AK316338 BAH14709 B7ZAM3  
X79201 CAA55792 Q15532
Q6FGL9
 
CR542088 CAG46885 Q6FGL9  
CR542103 CAG46900 Q6FGL9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SS18 NP_001007560 M.musculus Ss18 268996 Gene Info NP_033306 96
R.norvegicus Ss18 361295   NP_001094370 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)