Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LMX1B, LIM homeobox transcription factor 1, beta
Sequence ID:NM_001174146
NM_001174147
NM_002316
RefSeqGene ID:NG_017039
Entrez Gene ID:4010
Ensembl ID:ENSG00000136944

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
GLAUCOMA 1A, PRIMARY OPEN ANGLECYP1B1
MYOC
NAIL-PATELLA SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 129376797 - 129458730

 Exon Info From UCSC:
NM_001174146
NM_001174147
NM_002316

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262383Full LengthBC069601LIM homeobox transcription factor 1, beta
8322543Full LengthBC113491LIM homeobox transcription factor 1, beta
8327588Full LengthBC112120LIM homeobox transcription factor 1, beta
9052315Full LengthBC143801LIM homeobox transcription factor 1, beta
7262466IncompleteBC069588LIM homeobox transcription factor 1, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002307  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001174146 NP_001167617    
NM_001174147 NP_001167618    
NM_002316 NP_002307   Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
U77457 AAC13544 Q9UE66
AF057135 AAC39738 O60663
BC069588 AAH69588 Q6ISE0
BC069601 AAH69601 O60663
BC112120 AAI12121 O60663
BC113491 AAI13492 O60663
BC143801 AAI43802 B7ZLH2
HQ447493 ADQ31979  
HQ258228 ADR82982  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LMX1B NP_001167618 M.musculus Lmx1b 16917 Gene Info NP_034855 100
R.norvegicus Lmx1b 114501   XP_342420 100
C.elegans lim-6 180459   NP_508204 50
A.gambiae AgaP_AGAP005137 3289904   XP_558527 44
D.melanogaster CG32105 39406   NP_729801 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)