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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPHN1, oligophrenin 1
Sequence ID:NM_002547
RefSeqGene ID:NG_008960
Entrez Gene ID:4983
Ensembl ID:ENSG00000079482

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 67268265 - 67652862

 Exon Info From UCSC:
NM_002547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021631Full LengthBC140763oligophrenin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002538  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002547 NP_002538 O60890 PH
RhoGAP

Related Sequences

 
mRNAGenPeptSwissProt
BC059393 AAH59393 Q6PCC1
BC140763 AAI40764 O60890
AB102656 BAC81125 O60890
AK295769 BAG58594 B4DIT2
AJ001189 CAA04579 O60890

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPHN1 NP_002538 M.musculus Ophn1 94190 Gene Info NP_443208 92
R.norvegicus Ophn1 312108   NP_001101318 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta